Uses of Class
jebl.evolution.align.Align

Packages that use Align

jebl.evolution.align

Provides classes and interfaces for pairwise alignment of two sequences.

Uses of Align in jebl.evolution.align

Subclasses of Align in jebl.evolution.align

class	MaximalSegmentPair
class	NeedlemanWunsch
class	NeedlemanWunschAffine
class	NeedlemanWunschLinearSpace
class	NeedlemanWunschLinearSpaceAffine
class	NonOverlapMultipleLocalAffine Performs recursive local alignments.
class	OldNeedlemanWunschAffine
class	OverlapAlign
class	SmithWaterman
class	SmithWatermanLinearSpace
class	SmithWatermanLinearSpaceAffine

Methods in jebl.evolution.align with parameters of type Align

void	SequenceShuffler.shuffle(Align algorithm, String sq1, String sq2, int numShuffles)