Package jebl.evolution.align.scores

Interface Summary
ScoreMatrix  
 

Class Summary
AminoAcidScores  
Blosum45  
Blosum50  
Blosum55  
Blosum60  
Blosum62  
Blosum65  
Blosum70  
Blosum75  
Blosum80  
Blosum85  
Blosum90  
Hamming  
JukesCantor Jukes Cantor assumes equal substitution frequencies and equal nucleotide equilibrium frequencies.
NucleotideScores  
Pam100  
Pam110  
Pam120  
Pam130  
Pam140  
Pam150  
Pam160  
Pam170  
Pam180  
Pam190  
Pam200  
Pam210  
Pam220  
Pam230  
Pam240  
Pam250  
Scores Base class for all score matrices in the package.
ScoresFactory  
SubstScoreMatrix