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Interface Summary | |
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ScoreMatrix |
Class Summary | |
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AminoAcidScores | |
Blosum45 | |
Blosum50 | |
Blosum55 | |
Blosum60 | |
Blosum62 | |
Blosum65 | |
Blosum70 | |
Blosum75 | |
Blosum80 | |
Blosum85 | |
Blosum90 | |
Hamming | |
JukesCantor | Jukes Cantor assumes equal substitution frequencies and equal nucleotide equilibrium frequencies. |
NucleotideScores | |
Pam100 | |
Pam110 | |
Pam120 | |
Pam130 | |
Pam140 | |
Pam150 | |
Pam160 | |
Pam170 | |
Pam180 | |
Pam190 | |
Pam200 | |
Pam210 | |
Pam220 | |
Pam230 | |
Pam240 | |
Pam250 | |
Scores | Base class for all score matrices in the package. |
ScoresFactory | |
SubstScoreMatrix |
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