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java.lang.Object jebl.evolution.coalescent.ConstantPopulation jebl.evolution.coalescent.ExponentialGrowth jebl.evolution.coalescent.ConstExponential
public class ConstExponential
This class models exponential growth from an initial population size.
Nested Class Summary |
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Nested classes/interfaces inherited from interface jebl.evolution.coalescent.DemographicFunction |
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DemographicFunction.Utils |
Constructor Summary | |
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ConstExponential()
Construct demographic model with default settings |
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ConstExponential(double N0,
double r,
double N1)
Construct demographic model with given settings |
Method Summary | |
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double |
getArgument(int n)
Returns the value of the nth argument of this function. |
int |
getArgumentCount()
Returns the number of arguments for this function. |
String |
getArgumentName(int n)
Returns the name of the nth argument of this function. |
double |
getDemographic(double t)
Gets the value of the demographic function N(t) at time t. |
double |
getIntegral(double start,
double finish)
Calculates the integral 1/N(x) dx between start and finish. |
double |
getIntensity(double t)
Returns value of demographic intensity function at time t (= integral 1/N(x) dx from 0 to t). |
double |
getInverseIntensity(double x)
Returns value of inverse demographic intensity function (returns time, needed for simulation of coalescent intervals). |
double |
getLowerBound(int n)
Returns the lower bound of the nth argument of this function. |
double |
getN1()
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double |
getUpperBound(int n)
Returns the upper bound of the nth argument of this function. |
boolean |
hasIntegral()
returns whether an analytical expression for the integral is implemented |
void |
setArgument(int n,
double value)
Sets the value of the nth argument of this function. |
void |
setN1(double N1)
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void |
setProportion(double p)
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Methods inherited from class jebl.evolution.coalescent.ExponentialGrowth |
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getGrowthRate, setDoublingTime, setGrowthRate |
Methods inherited from class jebl.evolution.coalescent.ConstantPopulation |
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getN0, setN0 |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public ConstExponential()
public ConstExponential(double N0, double r, double N1)
Method Detail |
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public double getN1()
public void setN1(double N1)
public void setProportion(double p)
public double getDemographic(double t)
DemographicFunction
getDemographic
in interface DemographicFunction
getDemographic
in class ExponentialGrowth
public double getIntensity(double t)
DemographicFunction
getIntensity
in interface DemographicFunction
getIntensity
in class ExponentialGrowth
public double getInverseIntensity(double x)
DemographicFunction
getInverseIntensity
in interface DemographicFunction
getInverseIntensity
in class ExponentialGrowth
public boolean hasIntegral()
DemographicFunction
hasIntegral
in interface DemographicFunction
hasIntegral
in class ConstantPopulation
public double getIntegral(double start, double finish)
ConstantPopulation
getIntegral
in interface DemographicFunction
getIntegral
in class ConstantPopulation
public int getArgumentCount()
DemographicFunction
getArgumentCount
in interface DemographicFunction
getArgumentCount
in class ExponentialGrowth
public String getArgumentName(int n)
DemographicFunction
getArgumentName
in interface DemographicFunction
getArgumentName
in class ExponentialGrowth
public double getArgument(int n)
DemographicFunction
getArgument
in interface DemographicFunction
getArgument
in class ExponentialGrowth
public void setArgument(int n, double value)
DemographicFunction
setArgument
in interface DemographicFunction
setArgument
in class ExponentialGrowth
public double getLowerBound(int n)
DemographicFunction
getLowerBound
in interface DemographicFunction
getLowerBound
in class ExponentialGrowth
public double getUpperBound(int n)
DemographicFunction
getUpperBound
in interface DemographicFunction
getUpperBound
in class ExponentialGrowth
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