jebl.evolution.sequences
Class GaplessSequence

java.lang.Object
  jebl.evolution.sequences.FilteredSequence
      jebl.evolution.sequences.GaplessSequence

All Implemented Interfaces:

Comparable, Sequence, Attributable

public class GaplessSequence
extends FilteredSequence

Author:

rambaut Date: Jul 27, 2005 Time: 12:48:31 AM

Nested Class Summary

Nested classes/interfaces inherited from interface jebl.util.Attributable

Attributable.Utils

Constructor Summary

GaplessSequence(Sequence source)

Method Summary

protected State[]

filterSequence(Sequence source)

Methods inherited from class jebl.evolution.sequences.FilteredSequence

compareTo, getAttribute, getAttributeMap, getAttributeNames, getLength, getSequenceType, getState, getStateIndices, getStates, getString, getTaxon, removeAttribute, setAttribute

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GaplessSequence

public GaplessSequence(Sequence source)

Method Detail

filterSequence

protected State[] filterSequence(Sequence source)

Specified by:

filterSequence in class FilteredSequence