jebl.evolution.sequences
Class TranslatedSequence

java.lang.Object
  jebl.evolution.sequences.FilteredSequence
      jebl.evolution.sequences.TranslatedSequence

All Implemented Interfaces:

Comparable, Sequence, Attributable

public class TranslatedSequence
extends FilteredSequence

Author:

rambaut Date: Jul 27, 2005 Time: 12:48:31 AM

Nested Class Summary

Nested classes/interfaces inherited from interface jebl.util.Attributable

Attributable.Utils

Constructor Summary

TranslatedSequence(Sequence source, GeneticCode geneticCode)

Method Summary

protected State[]	filterSequence(Sequence source)
SequenceType	getSequenceType()

Methods inherited from class jebl.evolution.sequences.FilteredSequence

compareTo, getAttribute, getAttributeMap, getAttributeNames, getLength, getState, getStateIndices, getStates, getString, getTaxon, removeAttribute, setAttribute

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TranslatedSequence

public TranslatedSequence(Sequence source,
                          GeneticCode geneticCode)

Method Detail

filterSequence

protected State[] filterSequence(Sequence source)

Specified by:

filterSequence in class FilteredSequence

getSequenceType

public SequenceType getSequenceType()

Specified by:

getSequenceType in interface Sequence

Overrides:

getSequenceType in class FilteredSequence

Returns:

the type of symbols that this sequence is made up of.