Constant Field Values

Contents

• jebl.evolution.*
• jebl.gui.*
• org.virion.*

jebl.evolution.*

jebl.evolution.distances.ModelBasedDistanceMatrix

protected static final double

MAX_DISTANCE

1000.0

jebl.evolution.io.FastaImporter

public static final String

descriptionPropertyName

"description"

jebl.evolution.sequences.AminoAcids

public static final int	CANONICAL_STATE_COUNT	20
public static final String	NAME	"amino acid"
public static final int	STATE_COUNT	26

jebl.evolution.sequences.Codons

public static final int	CANONICAL_STATE_COUNT	64
public static final String	NAME	"codon"
public static final int	STATE_COUNT	66

jebl.evolution.sequences.Nucleotides

public static final int	CANONICAL_STATE_COUNT	4
public static final String	NAME	"nucleotide"
public static final int	STATE_COUNT	17

jebl.evolution.trees.ConsensusTreeBuilder<T extends Tree>

public static final String

DEFAULT_SUPPORT_ATTRIBUTE_NAME

"Consensus support(%)"

jebl.gui.*

jebl.gui.trees.treeviewer_dev.TreePane

public final String

COLLAPSE_ATTRIBUTE_NAME

"!collapse"

jebl.gui.trees.treeviewer_dev.painters.BasicLabelPainter

public static final String	BRANCH_LENGTHS	"Branch Lengths"
public static final String	NODE_HEIGHTS	"Node Heights"
public static final String	TAXON_NAMES	"Taxon Names"

jebl.gui.trees.treeviewer_dev.painters.NodeShapePainter

public static final String	AREA_ATTRIBUTE	"area"
public static final String	HEIGHT_ATTRIBUTE	"height"
public static final String	LOWER_ATTRIBUTE	"lower"
public static final String	RADIUS_ATTRIBUTE	"radius"
public static final String	UPPER_ATTRIBUTE	"upper"
public static final String	WIDTH_ATTRIBUTE	"width"

jebl.gui.trees.treeviewer.painters.BasicLabelPainter

public static final String	BRANCH_LENGTHS	"Branch Lengths"
public static final String	NODE_HEIGHTS	"Node Heights"
public static final String	TAXON_NAMES	"Taxon Names"

org.virion.*

org.virion.jam.app.Arguments

public static final String

ARGUMENT_CHARACTER

"-"

org.virion.jam.controlpalettes.BasicControlPalette

public static final int

DEFAULT_OPENING_SPEED

50

org.virion.jam.demo.menus.DemoMenuFactory

public static final String	FIRST	"First"
public static final String	SECOND	"Second"

org.virion.jam.framework.MenuFactory

public static final int	CENTER	1
public static final int	LEFT	0
public static final int	RIGHT	2

org.virion.jam.panels.StatusPanel

public static final int	ERROR	3
public static final int	NORMAL	0
public static final int	WARNING	2
public static final int	WORKING	1

org.virion.jam.table.ColorEditor

protected static final String

EDIT

"edit"

org.virion.jam.toolbar.ToolbarOptions

public static final int	ICON_AND_TEXT	0
public static final int	ICON_ONLY	1
public static final int	TEXT_ONLY	2

org.virion.jam.util.LongTaskMonitor

public static final int

ONE_SECOND

1000