jebl.evolution.trees
Class ConsensusTreeBuilder<T extends Tree>

java.lang.Object
  jebl.evolution.trees.ConsensusTreeBuilder<T>

All Implemented Interfaces:

TreeBuilder<T>

Direct Known Subclasses:

GreedyRootedConsensusTreeBuilder, GreedyUnrootedConsensusTreeBuilder, MRCACConsensusTreeBuilder

public abstract class ConsensusTreeBuilder<T extends Tree>
extends Object
implements TreeBuilder<T>

Build a consensus tree for a set of trees. Base class just check for consistency Work in progress.

Author:

Joseph Heled

Nested Class Summary

static class

ConsensusTreeBuilder.Method Supported consesus methods.

Field Summary

static String	DEFAULT_SUPPORT_ATTRIBUTE_NAME Name of attribute specifing amount of support for branch
protected int	nExternalNodes Number of external nodes/taxa
protected List<Taxon>	taxons List of common taxa in all trees

Method Summary

void	addProgressListener(ProgressListener listener)
protected boolean	fireSetProgress(double fractionCompleted)
String	getSupportAttributeName()
boolean	isSupportAsPercent()
void	removeProgressListener(ProgressListener listener)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface jebl.evolution.trees.TreeBuilder

build

Field Detail

DEFAULT_SUPPORT_ATTRIBUTE_NAME

public static final String DEFAULT_SUPPORT_ATTRIBUTE_NAME

Name of attribute specifing amount of support for branch

See Also:

Constant Field Values

nExternalNodes

protected final int nExternalNodes

Number of external nodes/taxa

taxons

protected List<Taxon> taxons

List of common taxa in all trees

Method Detail

getSupportAttributeName

public String getSupportAttributeName()

isSupportAsPercent

public boolean isSupportAsPercent()

addProgressListener

public void addProgressListener(ProgressListener listener)

Specified by:

addProgressListener in interface TreeBuilder<T extends Tree>

removeProgressListener

public void removeProgressListener(ProgressListener listener)

Specified by:

removeProgressListener in interface TreeBuilder<T extends Tree>

fireSetProgress

protected boolean fireSetProgress(double fractionCompleted)