Uses of Interface
jebl.evolution.align.scores.ScoreMatrix

Packages that use ScoreMatrix

jebl.evolution.align.scores

Uses of ScoreMatrix in jebl.evolution.align.scores

Classes in jebl.evolution.align.scores that implement ScoreMatrix

class	AminoAcidScores
class	Blosum45
class	Blosum50
class	Blosum55
class	Blosum60
class	Blosum62
class	Blosum65
class	Blosum70
class	Blosum75
class	Blosum80
class	Blosum85
class	Blosum90
class	Hamming
class	JukesCantor Jukes Cantor assumes equal substitution frequencies and equal nucleotide equilibrium frequencies.
class	NucleotideScores
class	Pam100
class	Pam110
class	Pam120
class	Pam130
class	Pam140
class	Pam150
class	Pam160
class	Pam170
class	Pam180
class	Pam190
class	Pam200
class	Pam210
class	Pam220
class	Pam230
class	Pam240
class	Pam250
class	Scores Base class for all score matrices in the package.
class	SubstScoreMatrix