Uses of Interface
jebl.evolution.alignments.Patterns

Packages that use Patterns
jebl.evolution.alignments   
jebl.evolution.parsimony   
 

Uses of Patterns in jebl.evolution.alignments
 

Subinterfaces of Patterns in jebl.evolution.alignments
 interface Alignment
           
 

Classes in jebl.evolution.alignments that implement Patterns
 class BasicAlignment
          A basic implementation of the Alignment interface.
 class BootrappedAlignment
          Date: 15/01/2006 Time: 10:13:50
 class JackknifedAlignment
          Date: 17/01/2006 Time: 08:18:32
 class ResampledAlignment
          Date: 17/01/2006 Time: 08:08:44
 

Uses of Patterns in jebl.evolution.parsimony
 

Constructors in jebl.evolution.parsimony with parameters of type Patterns
FitchParsimony(Patterns patterns, boolean gapsAreStates)