Uses of Interface
jebl.evolution.coalescent.DemographicFunction

Packages that use DemographicFunction

jebl.evolution.coalescent

Uses of DemographicFunction in jebl.evolution.coalescent

Classes in jebl.evolution.coalescent that implement DemographicFunction

class	CataclysmicDemographic This class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate).
class	ConstantPopulation This class models coalescent intervals for a constant population (parameter: N0=present-day population size).
class	ConstExponential This class models exponential growth from an initial population size.
class	ConstLogistic This class models logistic growth from an initial population size.
class	Expansion This class models exponential growth from an initial ancestral population size.
class	ExponentialGrowth This class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate).
class	LogisticGrowth This class models logistic growth.

Fields in jebl.evolution.coalescent declared as DemographicFunction

protected DemographicFunction

CoalescentIntervalGenerator.demographicFunction

Methods in jebl.evolution.coalescent with parameters of type DemographicFunction

static double	Coalescent.calculateLogLikelihood(IntervalList intervals, DemographicFunction demographicFunction) Calculates the log likelihood of this set of coalescent intervals, given a demographic model.
static void	DemographicFunction.Utils.testConsistency(DemographicFunction demographicFunction, int steps, double maxTime) This function tests the consistency of the getIntensity and getInverseIntensity methods of this demographic model.

Constructors in jebl.evolution.coalescent with parameters of type DemographicFunction

Coalescent(IntervalList intervals, DemographicFunction demographicFunction)

Coalescent(RootedTree tree, DemographicFunction demographicFunction)

CoalescentIntervalGenerator(DemographicFunction demographicFunction)