Uses of Interface
jebl.evolution.graphs.Graph

Packages that use Graph

jebl.evolution.graphs
jebl.evolution.trees

Uses of Graph in jebl.evolution.graphs

Methods in jebl.evolution.graphs with parameters of type Graph

static int	Graph.Utils.getDegree(Graph graph, Node node)
boolean	Utils.isAcyclical(Graph graph)
boolean	Utils.isConnected(Graph graph)
boolean	Utils.isTree(Graph graph)

Uses of Graph in jebl.evolution.trees

Subinterfaces of Graph in jebl.evolution.trees

interface	RootedTree A tree with a root (node with maximum height).
interface	Tree An unrooted tree.

Classes in jebl.evolution.trees that implement Graph

class	CompactRootedTree A memory efficient rooted tree.
class	FilteredRootedTree
class	MutableRootedTree A simple rooted tree providing some ability to manipulate the tree.
class	RootedFromUnrooted Root an unrooted tree.
class	SimpleRootedTree A simple, and initially immutable rooted tree implementation.
class	SimpleTree A basic implementation on an unrooted tree.
class	SortedRootedTree
class	TransformedRootedTree This RootedTree class wraps another RootedTree and transforms the branch lengths and node heights using various functions.