Uses of Interface
jebl.evolution.graphs.Node

Packages that use Node

jebl.evolution.characterReconstruction
jebl.evolution.graphs
jebl.evolution.parsimony
jebl.evolution.trees
jebl.gui.trees.treecomponent
jebl.gui.trees.treeviewer
jebl.gui.trees.treeviewer_dev
jebl.gui.trees.treeviewer_dev.painters
jebl.gui.trees.treeviewer_dev.treelayouts
jebl.gui.trees.treeviewer.decorators
jebl.gui.trees.treeviewer.painters
jebl.gui.trees.treeviewer.treelayouts

Uses of Node in jebl.evolution.characterReconstruction

Methods in jebl.evolution.characterReconstruction that return types with arguments of type Node

Map<Node,Double>	MLContinuousCharacterReconstructor.getPhenotypes()
Map<Node,Double>	MLContinuousCharacterReconstructor.getPhenotypesSE()

Uses of Node in jebl.evolution.graphs

Methods in jebl.evolution.graphs that return Node

Node[]

Graph.getNodes(Edge edge) Returns an array of 2 nodes which are the nodes at either end of the edge.

Methods in jebl.evolution.graphs that return types with arguments of type Node

List<Node>	Graph.getAdjacencies(Node node) Returns a list of nodes connected to this node by an edge
Set<Node>	Graph.getNodes()
Set<Node>	Graph.getNodes(int degree)

Methods in jebl.evolution.graphs with parameters of type Node

List<Node>	Graph.getAdjacencies(Node node) Returns a list of nodes connected to this node by an edge
static int	Graph.Utils.getDegree(Graph graph, Node node)
Edge	Graph.getEdge(Node node1, Node node2) Returns the Edge that connects these two nodes
double	Graph.getEdgeLength(Node node1, Node node2) Returns the length of the edge that connects these two nodes
List<Edge>	Graph.getEdges(Node node) Returns a list of edges connected to this node

Uses of Node in jebl.evolution.parsimony

Methods in jebl.evolution.parsimony with parameters of type Node

State[]	FitchParsimony.getStates(Tree tree, Node node) Returns the reconstructed character states for a given node in the tree.
State[]	ParsimonyCriterion.getStates(Tree tree, Node node) Returns the reconstructed character states for a given node in the tree.

Uses of Node in jebl.evolution.trees

Fields in jebl.evolution.trees declared as Node

protected Node[]	ClusteringTreeBuilder.clusters
protected Node	ClusteringTreeBuilder.newCluster

Fields in jebl.evolution.trees with type parameters of type Node

protected Set<Node>	MutableRootedTree.internalNodes
protected Set<Node>	SimpleRootedTree.internalNodes

Methods in jebl.evolution.trees that return Node

protected abstract Node	ClusteringTreeBuilder.createExternalNode(Taxon taxon)
Node	MutableRootedTree.createExternalNode(Taxon taxon) Creates a new external node with the given taxon.
protected Node	NeighborJoiningTreeBuilder.createExternalNode(Taxon taxon)
Node	SimpleRootedTree.createExternalNode(Taxon taxon) Creates a new external node with the given taxon.
Node	SimpleTree.createExternalNode(Taxon taxon) Creates a new external node with the given taxon.
Node	SimpleTree.createInternalNode(List<Node> adjacencies) Once a SimpleTree has been created, the node stucture can be created by calling createExternalNode and createInternalNode.
protected abstract Node	ClusteringTreeBuilder.createInternalNode(Node[] nodes, double[] distances)
protected Node	NeighborJoiningTreeBuilder.createInternalNode(Node[] nodes, double[] distances) Creates a new internal node that will have the specified nodes as its children
Node	SimpleRootedTree.createNodes(RootedTree tree, Node node) Clones the entire tree structure from the given RootedTree.
Node	SimpleRootedTree.createNodes(Tree tree, Node parent, Node child) Clones the entire tree structure from the given (unrooted) Tree.
Node	MutableRootedTree.detachChildren(Node node, List<Integer> split)
static Node	RootedTreeUtils.getCommonAncestorNode(RootedTree tree, Set<Node> tipNodes) Gets the most recent common ancestor (MRCA) node of a set of tip nodes.
Node	CompactRootedTree.getNode(Taxon taxon)
Node	FilteredRootedTree.getNode(Taxon taxon)
Node	MutableRootedTree.getNode(Taxon taxon)
Node	RootedFromUnrooted.getNode(Taxon taxon)
Node	SimpleRootedTree.getNode(Taxon taxon)
Node	SimpleTree.getNode(Taxon taxon)
Node	Tree.getNode(Taxon taxon)
Node[]	CompactRootedTree.getNodes(Edge edge)
Node[]	FilteredRootedTree.getNodes(Edge edge)
Node[]	MutableRootedTree.getNodes(Edge edge) Returns an array of 2 nodes which are the nodes at either end of the edge.
Node[]	RootedFromUnrooted.getNodes(Edge edge)
Node[]	SimpleRootedTree.getNodes(Edge edge) Returns an array of 2 nodes which are the nodes at either end of the edge.
Node[]	SimpleTree.getNodes(Edge edge) Returns an array of 2 nodes which are the nodes at either end of the edge.
Node	CompactRootedTree.getParent(Node node)
Node	FilteredRootedTree.getParent(Node node)
Node	MutableRootedTree.getParent(Node node)
Node	RootedFromUnrooted.getParent(Node node)
Node	RootedTree.getParent(Node node)
Node	SimpleRootedTree.getParent(Node node)
Node	CompactRootedTree.getRootNode()
Node	FilteredRootedTree.getRootNode()
Node	MutableRootedTree.getRootNode() The root of the tree has the largest node height of all nodes in the tree.
Node	RootedFromUnrooted.getRootNode()
Node	RootedTree.getRootNode() The root of the tree has the largest node height of all nodes in the tree.
Node	SimpleRootedTree.getRootNode() The root of the tree has the largest node height of all nodes in the tree.

Methods in jebl.evolution.trees that return types with arguments of type Node

static Comparator<Node>	Utils.createNodeDensityComparator(RootedTree tree)
static Comparator<Node>	Utils.createNodeDensityMinNodeHeightComparator(RootedTree tree)
List<Node>	CompactRootedTree.getAdjacencies(Node node)
List<Node>	FilteredRootedTree.getAdjacencies(Node node)
List<Node>	MutableRootedTree.getAdjacencies(Node node)
List<Node>	RootedFromUnrooted.getAdjacencies(Node node)
List<Node>	SimpleRootedTree.getAdjacencies(Node node)
List<Node>	SimpleTree.getAdjacencies(Node node)
List<Node>	CompactRootedTree.getChildren(Node node)
List<Node>	FilteredRootedTree.getChildren(Node node)
List<Node>	MutableRootedTree.getChildren(Node node)
List<Node>	RootedFromUnrooted.getChildren(Node node)
List<Node>	RootedTree.getChildren(Node node)
List<Node>	SimpleRootedTree.getChildren(Node node)
List<Node>	SortedRootedTree.getChildren(Node node)
static Set<Node>	RootedTreeUtils.getDescendantTips(RootedTree tree, Node node) Gets a set of tip nodes descended from the given node.
Set<Node>	CompactRootedTree.getExternalNodes()
Set<Node>	FilteredRootedTree.getExternalNodes()
Set<Node>	MutableRootedTree.getExternalNodes()
Set<Node>	RootedFromUnrooted.getExternalNodes()
Set<Node>	SimpleRootedTree.getExternalNodes()
Set<Node>	SimpleTree.getExternalNodes()
Set<Node>	Tree.getExternalNodes()
Set<Node>	CompactRootedTree.getInternalNodes()
Set<Node>	FilteredRootedTree.getInternalNodes()
Set<Node>	MutableRootedTree.getInternalNodes()
Set<Node>	RootedFromUnrooted.getInternalNodes()
Set<Node>	SimpleRootedTree.getInternalNodes()
Set<Node>	SimpleTree.getInternalNodes()
Set<Node>	Tree.getInternalNodes()
Set<Node>	CompactRootedTree.getNodes()
Set<Node>	FilteredRootedTree.getNodes()
Set<Node>	MutableRootedTree.getNodes()
Set<Node>	RootedFromUnrooted.getNodes()
Set<Node>	SimpleRootedTree.getNodes()
Set<Node>	SimpleTree.getNodes()
Set<Node>	CompactRootedTree.getNodes(int degree)
Set<Node>	FilteredRootedTree.getNodes(int degree)
Set<Node>	MutableRootedTree.getNodes(int degree)
Set<Node>	RootedFromUnrooted.getNodes(int degree)
Set<Node>	SimpleRootedTree.getNodes(int degree)
Set<Node>	SimpleTree.getNodes(int degree)
static Set<Node>	RootedTreeUtils.getTipsForTaxa(RootedTree tree, Collection<Taxon> taxa) Gets a set of external nodes that correspond to the given taxa.

Methods in jebl.evolution.trees with parameters of type Node

void	SimpleTree.addEdge(Node node1, Node node2, double length) Add a new edge between two existing nodes.
protected abstract Node	ClusteringTreeBuilder.createInternalNode(Node[] nodes, double[] distances)
protected Node	NeighborJoiningTreeBuilder.createInternalNode(Node[] nodes, double[] distances) Creates a new internal node that will have the specified nodes as its children
Node	SimpleRootedTree.createNodes(RootedTree tree, Node node) Clones the entire tree structure from the given RootedTree.
Node	SimpleRootedTree.createNodes(Tree tree, Node parent, Node child) Clones the entire tree structure from the given (unrooted) Tree.
static String	Utils.DEBUGsubTreeRep(RootedTree t, Node n)
Node	MutableRootedTree.detachChildren(Node node, List<Integer> split)
List<Node>	CompactRootedTree.getAdjacencies(Node node)
List<Node>	FilteredRootedTree.getAdjacencies(Node node)
List<Node>	MutableRootedTree.getAdjacencies(Node node)
List<Node>	RootedFromUnrooted.getAdjacencies(Node node)
List<Node>	SimpleRootedTree.getAdjacencies(Node node)
List<Node>	SimpleTree.getAdjacencies(Node node)
List<Node>	CompactRootedTree.getChildren(Node node)
List<Node>	FilteredRootedTree.getChildren(Node node)
List<Node>	MutableRootedTree.getChildren(Node node)
List<Node>	RootedFromUnrooted.getChildren(Node node)
List<Node>	RootedTree.getChildren(Node node)
List<Node>	SimpleRootedTree.getChildren(Node node)
List<Node>	SortedRootedTree.getChildren(Node node)
static Set<Node>	RootedTreeUtils.getDescendantTips(RootedTree tree, Node node) Gets a set of tip nodes descended from the given node.
Edge	CompactRootedTree.getEdge(Node node1, Node node2)
Edge	FilteredRootedTree.getEdge(Node node1, Node node2)
Edge	MutableRootedTree.getEdge(Node node1, Node node2) Returns the Edge that connects these two nodes
Edge	RootedFromUnrooted.getEdge(Node node1, Node node2)
Edge	SimpleRootedTree.getEdge(Node node1, Node node2) Returns the Edge that connects these two nodes
Edge	SimpleTree.getEdge(Node node1, Node node2) Returns the Edge that connects these two nodes
double	CompactRootedTree.getEdgeLength(Node node1, Node node2)
double	FilteredRootedTree.getEdgeLength(Node node1, Node node2)
double	MutableRootedTree.getEdgeLength(Node node1, Node node2)
double	RootedFromUnrooted.getEdgeLength(Node node1, Node node2)
double	SimpleRootedTree.getEdgeLength(Node node1, Node node2)
double	SimpleTree.getEdgeLength(Node node1, Node node2)
List<Edge>	CompactRootedTree.getEdges(Node node)
List<Edge>	FilteredRootedTree.getEdges(Node node)
List<Edge>	MutableRootedTree.getEdges(Node node) Returns a list of edges connected to this node
List<Edge>	RootedFromUnrooted.getEdges(Node node) Returns a list of edges connected to this node
List<Edge>	SimpleRootedTree.getEdges(Node node) Returns a list of edges connected to this node
List<Edge>	SimpleTree.getEdges(Node node) Returns a list of edges connected to this node
static int	Utils.getExternalNodeCount(RootedTree tree, Node node) Return the number of external nodes under this node.
double	CompactRootedTree.getHeight(Node node)
double	FilteredRootedTree.getHeight(Node node)
double	MutableRootedTree.getHeight(Node node)
double	RootedFromUnrooted.getHeight(Node node)
double	RootedTree.getHeight(Node node)
double	SimpleRootedTree.getHeight(Node node)
double	TransformedRootedTree.getHeight(Node node)
double	CompactRootedTree.getLength(Node node)
double	FilteredRootedTree.getLength(Node node)
double	MutableRootedTree.getLength(Node node)
double	RootedFromUnrooted.getLength(Node node)
double	RootedTree.getLength(Node node)
double	SimpleRootedTree.getLength(Node node)
double	TransformedRootedTree.getLength(Node node)
static double	RootedTreeUtils.getMaxTipHeight(RootedTree tree, Node node)
static double	Utils.getMinNodeHeight(RootedTree tree, Node node)
static double	RootedTreeUtils.getMinTipHeight(RootedTree tree, Node node)
Node	CompactRootedTree.getParent(Node node)
Node	FilteredRootedTree.getParent(Node node)
Node	MutableRootedTree.getParent(Node node)
Node	RootedFromUnrooted.getParent(Node node)
Node	RootedTree.getParent(Node node)
Node	SimpleRootedTree.getParent(Node node)
static double	Utils.getPathLength(Tree tree, Node node1, Node node2)
Taxon	CompactRootedTree.getTaxon(Node node)
Taxon	FilteredRootedTree.getTaxon(Node node)
Taxon	MutableRootedTree.getTaxon(Node node)
Taxon	RootedFromUnrooted.getTaxon(Node node)
Taxon	SimpleRootedTree.getTaxon(Node node)
Taxon	SimpleTree.getTaxon(Node node)
Taxon	Tree.getTaxon(Node node)
static int	RootedTreeUtils.getTipCount(RootedTree tree, Node node) Return the number of leaves under this node.
boolean	CompactRootedTree.isExternal(Node node)
boolean	FilteredRootedTree.isExternal(Node node)
boolean	MutableRootedTree.isExternal(Node node)
boolean	RootedFromUnrooted.isExternal(Node node)
boolean	SimpleRootedTree.isExternal(Node node)
boolean	SimpleTree.isExternal(Node node)
boolean	Tree.isExternal(Node node)
boolean	CompactRootedTree.isRoot(Node node)
boolean	FilteredRootedTree.isRoot(Node node)
boolean	MutableRootedTree.isRoot(Node node)
boolean	RootedFromUnrooted.isRoot(Node node)
boolean	RootedTree.isRoot(Node node)
boolean	SimpleRootedTree.isRoot(Node node)
void	MutableRootedTree.refineNode(Node node, int[] leftSet)
void	MutableRootedTree.removeInternalNode(Node node) Remove internal node.
void	MutableRootedTree.reRootWithOutgroup(Node outGroup, Set<String> attributeNames) Re-root tree using an outgroup.
static double	Utils.safeNodeHeight(RootedTree tree, Node node)
void	SimpleTree.setEdgeLength(Node node1, Node node2, double length) Set edge distance between two nodes.
void	MutableRootedTree.setHeight(Node node, double height)
void	SimpleRootedTree.setHeight(Node node, double height)
void	MutableRootedTree.setLength(Node node, double length)
void	SimpleRootedTree.setLength(Node node, double length)
static String	RootedTreeUtils.uniqueNewick(RootedTree tree, Node node) Recursive function for constructing a newick tree representation in the given buffer.

Method parameters in jebl.evolution.trees with type arguments of type Node

jebl.evolution.trees.MutableRootedTree.MutableRootedNode	MutableRootedTree.createInternalNode(List<? extends Node> children) Once a SimpleRootedTree has been created, the node stucture can be created by calling createExternalNode and createInternalNode.
jebl.evolution.trees.SimpleRootedTree.SimpleRootedNode	SimpleRootedTree.createInternalNode(List<? extends Node> children) Once a SimpleRootedTree has been created, the node stucture can be created by calling createExternalNode and createInternalNode.
Node	SimpleTree.createInternalNode(List<Node> adjacencies) Once a SimpleTree has been created, the node stucture can be created by calling createExternalNode and createInternalNode.
static Node	RootedTreeUtils.getCommonAncestorNode(RootedTree tree, Set<Node> tipNodes) Gets the most recent common ancestor (MRCA) node of a set of tip nodes.
static boolean	RootedTreeUtils.isMonophyletic(RootedTree tree, Set<Node> tipNodes) Performs the a monophyly test on a set of tip nodes.

Constructors in jebl.evolution.trees with parameters of type Node

MutableRootedTree(Tree tree, Node outGroup)
Construct a rooted tree from unrooted.

RootedFromUnrooted(Tree source, Node root, boolean intent)
Root tree source at root.

RootedFromUnrooted(Tree source, Node left, Node right, double fromLeft)
Root source by creating a new internal node whose children are (the adjacent) left and right.

SimpleRootedTree(Tree tree, Node ingroupNode, Node outgroupNode, double ingroupBranchLength)
Make a copy of the given unrooted tree

Constructor parameters in jebl.evolution.trees with type arguments of type Node

SortedRootedTree(RootedTree source, Comparator<Node> comparator)

Uses of Node in jebl.gui.trees.treecomponent

Methods in jebl.gui.trees.treecomponent that return Node

Node	RootedTreePainter.findNodeAtPoint(Point2D point) Find the node under point.
Node	SquareTreePainter.findNodeAtPoint(Point2D point) Find the node under point.

Methods in jebl.gui.trees.treecomponent with parameters of type Node

protected void	RootedTreeComponent.fireNodeClickedEvent(Node node) Tells tree listeners that a node has been clicked.
void	RootedTreeComponent.Listener.nodeClicked(RootedTree tree, Node node)
void	RootedTreeComponent.Adaptor.nodeClicked(RootedTree tree, Node node)

Uses of Node in jebl.gui.trees.treeviewer

Methods in jebl.gui.trees.treeviewer that return Node

Node	TreePane.getNodeAt(Graphics2D g2, Point point)

Methods in jebl.gui.trees.treeviewer that return types with arguments of type Node

Painter<Node>	TreePane.getBranchLabelPainter()
Painter<Node>	TreePane.getNodeLabelPainter()
Set<Node>	TreePane.getNodesAt(Graphics2D g2, Rectangle rect)
Set<Node>	TreePane.getSelectedNodes()
Painter<Node>	TreePane.getTaxonLabelPainter()

Methods in jebl.gui.trees.treeviewer with parameters of type Node

void	TreePane.addSelectedClade(Node selectedNode)
void	TreePane.addSelectedNode(Node selectedNode)
void	TreePane.addSelectedTaxa(Node selectedNode)
void	TreePane.setSelectedClade(Node selectedNode)
void	TreePane.setSelectedNode(Node selectedNode)
void	TreePane.setSelectedTaxa(Node selectedNode)

Method parameters in jebl.gui.trees.treeviewer with type arguments of type Node

void	TreePane.setBranchLabelPainter(Painter<Node> branchLabelPainter)
void	TreePane.setNodeLabelPainter(Painter<Node> nodeLabelPainter)
void	TreeViewer.setNodeLabelPainter(Painter<Node> nodeLabelPainter)
void	TreePane.setTaxonLabelPainter(Painter<Node> taxonLabelPainter)

Uses of Node in jebl.gui.trees.treeviewer_dev

Methods in jebl.gui.trees.treeviewer_dev that return Node

Node	TreePane.getNodeAt(Graphics2D g2, Point point)

Methods in jebl.gui.trees.treeviewer_dev that return types with arguments of type Node

Painter<Node>	TreePane.getBranchLabelPainter()
Painter<Node>	TreePane.getNodeBarPainter()
Painter<Node>	TreePane.getNodeLabelPainter()
Set<Node>	TreePane.getNodesAt(Graphics2D g2, Rectangle rect)
Set<Node>	TreePane.getSelectedNodes()
Set<Node>	TreePane.getSelectedTips()
Painter<Node>	TreePane.getTipLabelPainter()

Methods in jebl.gui.trees.treeviewer_dev with parameters of type Node

void	TreePane.addSelectedClade(Node selectedNode)
void	TreePane.addSelectedNode(Node selectedNode)
void	TreePane.addSelectedTip(Node selectedTip)
void	TreePane.addSelectedTips(Node selectedNode)
void	TreePane.setSelectedClade(Node selectedNode)
void	TreePane.setSelectedNode(Node selectedNode)
void	TreePane.setSelectedTip(Node selectedTip)
void	TreePane.setSelectedTips(Node selectedNode)

Method parameters in jebl.gui.trees.treeviewer_dev with type arguments of type Node

void	TreePane.setBranchLabelPainter(LabelPainter<Node> branchLabelPainter)
void	TreePane.setNodeLabelPainter(LabelPainter<Node> nodeLabelPainter)
void	TreePane.setTipLabelPainter(LabelPainter<Node> tipLabelPainter)

Uses of Node in jebl.gui.trees.treeviewer_dev.painters

Methods in jebl.gui.trees.treeviewer_dev.painters with parameters of type Node

Rectangle2D	BasicLabelPainter.calibrate(Graphics2D g2, Node item)
Rectangle2D	NodeBarPainter.calibrate(Graphics2D g2, Node node)
Rectangle2D	NodeShapePainter.calibrate(Graphics2D g2, Node item)
protected String	BasicLabelPainter.getLabel(Tree tree, Node node)
void	BasicLabelPainter.paint(Graphics2D g2, Node item, Painter.Justification justification, Rectangle2D bounds)
void	NodeBarPainter.paint(Graphics2D g2, Node node, Painter.Justification justification, Rectangle2D bounds) The bounds define the shape of the nodeBar so just draw it
void	NodeShapePainter.paint(Graphics2D g2, Node item, Painter.Justification justification, Rectangle2D bounds) The bounds define the shape of the bar so just draw it
void	NodeBarPainter.paint(Graphics2D g2, Node node, Painter.Justification justification, Shape barShape) The bounds define the shape of the nodeBar so just draw it

Uses of Node in jebl.gui.trees.treeviewer_dev.treelayouts

Fields in jebl.gui.trees.treeviewer_dev.treelayouts with type parameters of type Node

protected Map<Node,Line2D>	AbstractTreeLayout.branchLabelPaths
protected Map<Node,Shape>	AbstractTreeLayout.branchPaths
protected Map<Node,Shape>	AbstractTreeLayout.calloutPaths
protected Map<Node,Shape>	AbstractTreeLayout.collapsedShapes
protected Map<Node,Line2D>	AbstractTreeLayout.nodeBarPaths
protected Map<Node,Line2D>	AbstractTreeLayout.nodeLabelPaths
protected Map<Node,Point2D>	AbstractTreeLayout.nodePoints
protected Map<Node,Line2D>	AbstractTreeLayout.tipLabelPaths

Methods in jebl.gui.trees.treeviewer_dev.treelayouts that return types with arguments of type Node

Map<Node,Line2D>	AbstractTreeLayout.getBranchLabelPathMap()
Map<Node,Line2D>	TreeLayout.getBranchLabelPathMap()
Map<Node,Shape>	AbstractTreeLayout.getBranchPathMap()
Map<Node,Shape>	TreeLayout.getBranchPathMap()
Map<Node,Shape>	AbstractTreeLayout.getCalloutPathMap()
Map<Node,Shape>	TreeLayout.getCalloutPathMap()
Map<Node,Shape>	AbstractTreeLayout.getCollapsedShapeMap()
Map<Node,Shape>	TreeLayout.getCollapsedShapeMap()
Map<Node,Line2D>	AbstractTreeLayout.getNodeBarPathMap()
Map<Node,Line2D>	TreeLayout.getNodeBarPathMap()
Map<Node,Line2D>	AbstractTreeLayout.getNodeLabelPathMap()
Map<Node,Line2D>	TreeLayout.getNodeLabelPathMap()
Map<Node,Line2D>	AbstractTreeLayout.getTipLabelPathMap()
Map<Node,Line2D>	TreeLayout.getTipLabelPathMap()

Methods in jebl.gui.trees.treeviewer_dev.treelayouts with parameters of type Node

Line2D	AbstractTreeLayout.getBranchLabelPath(Node node)
Line2D	TreeLayout.getBranchLabelPath(Node node)
Shape	AbstractTreeLayout.getBranchPath(Node node)
Shape	TreeLayout.getBranchPath(Node node) Return the shape that represents the given branch
Shape	AbstractTreeLayout.getCalloutPath(Node node)
Shape	TreeLayout.getCalloutPath(Node node)
Shape	AbstractTreeLayout.getCollapsedShape(Node node)
Shape	TreeLayout.getCollapsedShape(Node node) Return the shape that represents this node when collapsed
Line2D	AbstractTreeLayout.getNodeBarPath(Node node)
Line2D	TreeLayout.getNodeBarPath(Node node)
Line2D	AbstractTreeLayout.getNodeLabelPath(Node node)
Line2D	TreeLayout.getNodeLabelPath(Node node)
Point2D	AbstractTreeLayout.getNodePoint(Node node)
Point2D	TreeLayout.getNodePoint(Node node) Return the point in 2d space of the given node
Line2D	AbstractTreeLayout.getTipLabelPath(Node node)
Line2D	TreeLayout.getTipLabelPath(Node node)

Uses of Node in jebl.gui.trees.treeviewer.decorators

Methods in jebl.gui.trees.treeviewer.decorators with parameters of type Node

Paint	AttributeBranchDecorator.getBranchPaint(Tree tree, Node node)
Paint	BranchDecorator.getBranchPaint(Tree tree, Node node)

Uses of Node in jebl.gui.trees.treeviewer.painters

Methods in jebl.gui.trees.treeviewer.painters with parameters of type Node

void	BasicLabelPainter.calibrate(Graphics2D g2, Node item)
protected String	BasicLabelPainter.getLabel(Node node)
void	BasicLabelPainter.paint(Graphics2D g2, Node item, Painter.Justification justification, Rectangle2D bounds)

Uses of Node in jebl.gui.trees.treeviewer.treelayouts

Fields in jebl.gui.trees.treeviewer.treelayouts with type parameters of type Node

protected Map<Node,Line2D>	AbstractTreeLayout.branchLabelPaths
protected Map<Node,Shape>	AbstractTreeLayout.branchPaths
protected Map<Node,Shape>	AbstractTreeLayout.calloutPaths
protected Map<Node,Line2D>	AbstractTreeLayout.nodeLabelPaths
protected Map<Node,Point2D>	AbstractTreeLayout.nodePoints
protected Map<Node,Line2D>	AbstractTreeLayout.taxonLabelPaths

Methods in jebl.gui.trees.treeviewer.treelayouts with parameters of type Node

Line2D	AbstractTreeLayout.getBranchLabelPath(Node node)
Line2D	TreeLayout.getBranchLabelPath(Node node)
Shape	AbstractTreeLayout.getBranchPath(Node node)
Shape	TreeLayout.getBranchPath(Node node) Return the shape that represents the given branch
Shape	AbstractTreeLayout.getCalloutPath(Node node)
Shape	TreeLayout.getCalloutPath(Node node)
Line2D	AbstractTreeLayout.getNodeLabelPath(Node node)
Line2D	TreeLayout.getNodeLabelPath(Node node)
Point2D	AbstractTreeLayout.getNodePoint(Node node)
Point2D	TreeLayout.getNodePoint(Node node) Return the point in 2d space of the given node
Line2D	AbstractTreeLayout.getTaxonLabelPath(Node node)
Line2D	TreeLayout.getTaxonLabelPath(Node node)