jebl.evolution.align
Interface MultipleAligner

All Known Implementing Classes:

BartonSternberg

public interface MultipleAligner

Author:

Joseph Heled

Method Summary

Alignment	doAlign(Alignment a1, Alignment a2, ProgressListener progress)
Alignment	doAlign(Alignment alignment, Sequence sequence, ProgressListener progress)
Alignment	doAlign(List<Sequence> seqs, RootedTree guideTree, ProgressListener progress)

Method Detail

doAlign

Alignment doAlign(List<Sequence> seqs,
                  RootedTree guideTree,
                  ProgressListener progress)

doAlign

Alignment doAlign(Alignment a1,
                  Alignment a2,
                  ProgressListener progress)

doAlign

Alignment doAlign(Alignment alignment,
                  Sequence sequence,
                  ProgressListener progress)