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Hierarchy For Package jebl.evolution.align
Package Hierarchies:
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Class Hierarchy
java.lang.
Object
jebl.evolution.align.
Align
jebl.evolution.align.
MaximalSegmentPair
jebl.evolution.align.
NeedlemanWunsch
jebl.evolution.align.
NeedlemanWunschAffine
jebl.evolution.align.
NeedlemanWunschLinearSpace
jebl.evolution.align.
NeedlemanWunschLinearSpaceAffine
(implements jebl.evolution.align.
PairwiseAligner
)
jebl.evolution.align.
NonOverlapMultipleLocalAffine
jebl.evolution.align.
OldNeedlemanWunschAffine
jebl.evolution.align.
OverlapAlign
jebl.evolution.align.
SmithWaterman
jebl.evolution.align.
SmithWatermanLinearSpace
jebl.evolution.align.
SmithWatermanLinearSpaceAffine
jebl.evolution.align.
AlignCommand
jebl.evolution.align.
AlignmentTreeBuilderFactory
jebl.evolution.align.
AlignmentTreeBuilderFactory.Result
jebl.evolution.align.
BartonSternberg
(implements jebl.evolution.align.
MultipleAligner
)
jebl.evolution.distances.
BasicDistanceMatrix
(implements jebl.evolution.distances.
DistanceMatrix
)
jebl.evolution.align.
SequenceAlignmentsDistanceMatrix
jebl.evolution.align.
Output
jebl.evolution.align.
PairwiseAligner.Result
jebl.evolution.align.
ProfileCharacter
jebl.evolution.align.
SequenceShuffler
jebl.evolution.align.
Traceback
Interface Hierarchy
jebl.evolution.align.
MultipleAligner
jebl.evolution.align.
PairwiseAligner
jebl.evolution.align.
TracebackPlotter
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