Hierarchy For Package jebl.evolution.align

Package Hierarchies:

All Packages

Class Hierarchy

• java.lang.Object
  • jebl.evolution.align.Align
    • jebl.evolution.align.MaximalSegmentPair
    • jebl.evolution.align.NeedlemanWunsch
    • jebl.evolution.align.NeedlemanWunschAffine
    • jebl.evolution.align.NeedlemanWunschLinearSpace
    • jebl.evolution.align.NeedlemanWunschLinearSpaceAffine (implements jebl.evolution.align.PairwiseAligner)
    • jebl.evolution.align.NonOverlapMultipleLocalAffine
    • jebl.evolution.align.OldNeedlemanWunschAffine
    • jebl.evolution.align.OverlapAlign
    • jebl.evolution.align.SmithWaterman
    • jebl.evolution.align.SmithWatermanLinearSpace
    • jebl.evolution.align.SmithWatermanLinearSpaceAffine
  • jebl.evolution.align.AlignCommand
  • jebl.evolution.align.AlignmentTreeBuilderFactory
  • jebl.evolution.align.AlignmentTreeBuilderFactory.Result
  • jebl.evolution.align.BartonSternberg (implements jebl.evolution.align.MultipleAligner)
  • jebl.evolution.distances.BasicDistanceMatrix (implements jebl.evolution.distances.DistanceMatrix)
    • jebl.evolution.align.SequenceAlignmentsDistanceMatrix
  • jebl.evolution.align.Output
  • jebl.evolution.align.PairwiseAligner.Result
  • jebl.evolution.align.ProfileCharacter
  • jebl.evolution.align.SequenceShuffler
  • jebl.evolution.align.Traceback

Interface Hierarchy

• jebl.evolution.align.MultipleAligner
• jebl.evolution.align.PairwiseAligner
• jebl.evolution.align.TracebackPlotter