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jebl.evolution.align
Interface PairwiseAligner

All Known Implementing Classes:
NeedlemanWunschLinearSpaceAffine
public interface PairwiseAligner

Author:
Joseph Heled

Nested Class Summary
static class PairwiseAligner.Result
           
 
Method Summary
 PairwiseAligner.Result doAlignment(Sequence seq1, Sequence seq2, ProgressListener progress)
           
 double getScore(Sequence seq1, Sequence seq2)
           
 

Method Detail

doAlignment

PairwiseAligner.Result doAlignment(Sequence seq1,
                                   Sequence seq2,
                                   ProgressListener progress)

getScore

double getScore(Sequence seq1,
                Sequence seq2)
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