Uses of Interface
jebl.evolution.align.PairwiseAligner

Packages that use PairwiseAligner

jebl.evolution.align

Provides classes and interfaces for pairwise alignment of two sequences.

Uses of PairwiseAligner in jebl.evolution.align

Classes in jebl.evolution.align that implement PairwiseAligner

class

NeedlemanWunschLinearSpaceAffine

Methods in jebl.evolution.align with parameters of type PairwiseAligner

static AlignmentTreeBuilderFactory.Result

AlignmentTreeBuilderFactory.build(List<Sequence> seqs, TreeBuilderFactory.Method method, PairwiseAligner aligner, ProgressListener progress)

Constructors in jebl.evolution.align with parameters of type PairwiseAligner

SequenceAlignmentsDistanceMatrix(List<Sequence> seqs, PairwiseAligner aligner, ProgressListener progress)