jebl.evolution.align
Class AlignmentTreeBuilderFactory

java.lang.Object
  jebl.evolution.align.AlignmentTreeBuilderFactory

public class AlignmentTreeBuilderFactory
extends Object

Author:

Joseph Heled

Nested Class Summary

static class

AlignmentTreeBuilderFactory.Result

Constructor Summary

AlignmentTreeBuilderFactory()

Method Summary

static AlignmentTreeBuilderFactory.Result	build(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progress)
static AlignmentTreeBuilderFactory.Result	build(List<Sequence> seqs, TreeBuilderFactory.Method method, MultipleAligner aligner, ProgressListener progress)
static AlignmentTreeBuilderFactory.Result	build(List<Sequence> seqs, TreeBuilderFactory.Method method, PairwiseAligner aligner, ProgressListener progress)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AlignmentTreeBuilderFactory

public AlignmentTreeBuilderFactory()

Method Detail

build

public static AlignmentTreeBuilderFactory.Result build(Alignment alignment,
                                                       TreeBuilderFactory.Method method,
                                                       TreeBuilderFactory.DistanceModel model,
                                                       ProgressListener progress)

build

public static AlignmentTreeBuilderFactory.Result build(List<Sequence> seqs,
                                                       TreeBuilderFactory.Method method,
                                                       PairwiseAligner aligner,
                                                       ProgressListener progress)

build

public static AlignmentTreeBuilderFactory.Result build(List<Sequence> seqs,
                                                       TreeBuilderFactory.Method method,
                                                       MultipleAligner aligner,
                                                       ProgressListener progress)