jebl.evolution.align
Class SequenceAlignmentsDistanceMatrix

java.lang.Object
  jebl.evolution.distances.BasicDistanceMatrix
      jebl.evolution.align.SequenceAlignmentsDistanceMatrix

All Implemented Interfaces:

DistanceMatrix

public class SequenceAlignmentsDistanceMatrix
extends BasicDistanceMatrix

Author:

Joseph Heled

Constructor Summary

SequenceAlignmentsDistanceMatrix(List<Sequence> seqs, PairwiseAligner aligner, ProgressListener progress)

Method Summary

Methods inherited from class jebl.evolution.distances.BasicDistanceMatrix

getDistance, getDistance, getDistances, getSize, getSubmatrix, getTaxa

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SequenceAlignmentsDistanceMatrix

public SequenceAlignmentsDistanceMatrix(List<Sequence> seqs,
                                        PairwiseAligner aligner,
                                        ProgressListener progress)