jebl.evolution.distances
Class HKYDistanceMatrix

java.lang.Object
  jebl.evolution.distances.BasicDistanceMatrix
      jebl.evolution.distances.HKYDistanceMatrix

All Implemented Interfaces:

DistanceMatrix

public class HKYDistanceMatrix
extends BasicDistanceMatrix

Compute HKY corrected distance matrix

Author:

Andrew Rambaut, Joseph Heled

Constructor Summary

HKYDistanceMatrix(Alignment alignment, ProgressListener progress)

Method Summary

Methods inherited from class jebl.evolution.distances.BasicDistanceMatrix

getDistance, getDistance, getDistances, getSize, getSubmatrix, getTaxa

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

HKYDistanceMatrix

public HKYDistanceMatrix(Alignment alignment,
                         ProgressListener progress)