jebl.evolution.distances
Class JukesCantorDistanceMatrix

java.lang.Object
  jebl.evolution.distances.BasicDistanceMatrix
      jebl.evolution.distances.JukesCantorDistanceMatrix

All Implemented Interfaces:

DistanceMatrix

public class JukesCantorDistanceMatrix
extends BasicDistanceMatrix

Compute jukes-cantor corrected distance matrix for a set of aligned sequences. Adapted from BEAST code by joseph.

Author:

Andrew Rambaut, Korbinian Strimmer, Joseph Heled

Constructor Summary

JukesCantorDistanceMatrix(Alignment alignment, ProgressListener progress)

Method Summary

Methods inherited from class jebl.evolution.distances.BasicDistanceMatrix

getDistance, getDistance, getDistances, getSize, getSubmatrix, getTaxa

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

JukesCantorDistanceMatrix

public JukesCantorDistanceMatrix(Alignment alignment,
                                 ProgressListener progress)