Uses of Package
jebl.evolution.sequences

Packages that use jebl.evolution.sequences

jebl.evolution.align	Provides classes and interfaces for pairwise alignment of two sequences.
jebl.evolution.aligners
jebl.evolution.alignments
jebl.evolution.distances
jebl.evolution.io
jebl.evolution.parsimony
jebl.evolution.sequences
jebl.evolution.substmodel

Classes in jebl.evolution.sequences used by jebl.evolution.align

Sequence
A biomolecular sequence.

Classes in jebl.evolution.sequences used by jebl.evolution.aligners

Sequence
A biomolecular sequence.

Classes in jebl.evolution.sequences used by jebl.evolution.alignments

Sequence
A biomolecular sequence.

Sequences
A set of sequence objects.

SequenceType
Interface for sequences data types.

State

Classes in jebl.evolution.sequences used by jebl.evolution.distances

Sequence
A biomolecular sequence.

Classes in jebl.evolution.sequences used by jebl.evolution.io

Sequence
A biomolecular sequence.

SequenceType
Interface for sequences data types.

Classes in jebl.evolution.sequences used by jebl.evolution.parsimony

State

Classes in jebl.evolution.sequences used by jebl.evolution.sequences

AminoAcidState

CodonState

FilteredSequence

GeneticCode
A set of standard genetic codes.

NucleotideState

Sequence
A biomolecular sequence.

SequenceType
Interface for sequences data types.

State

StateClassification

Classes in jebl.evolution.sequences used by jebl.evolution.substmodel

SequenceType
Interface for sequences data types.