jebl.evolution.trees
Class CladeSystem

java.lang.Object
  jebl.evolution.trees.CladeSystem

public class CladeSystem
extends Object

Stores a set of unique clades for a tree

Author:

Andrew Rambaut

Constructor Summary

CladeSystem()

CladeSystem(RootedTree tree)

Method Summary

void	add(RootedTree tree) adds all the clades in the tree
Set<Taxon>	getClade(int index)
int	getCladeCount() get number of unique clades
double	getCladeFrequency(int index) get clade frequency
String	getCladeString(int index)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CladeSystem

public CladeSystem()

CladeSystem

public CladeSystem(RootedTree tree)

Parameters:

tree -

Method Detail

getCladeCount

public int getCladeCount()

get number of unique clades

getClade

public Set<Taxon> getClade(int index)

getCladeString

public String getCladeString(int index)

getCladeFrequency

public double getCladeFrequency(int index)

get clade frequency

add

public void add(RootedTree tree)

adds all the clades in the tree