jebl.evolution.trees
Class SplitSystem

java.lang.Object
  jebl.evolution.trees.SplitSystem

public class SplitSystem
extends Object

data structure for a set of splits

Author:

Korbinian Strimmer

Constructor Summary

SplitSystem(Collection<Taxon> taxa, int size)

Method Summary

int	getLabelCount() get number of labels
boolean[]	getSplit(int i) get split
int	getSplitCount() get number of splits
boolean[][]	getSplitVector() get split vector
List<Taxon>	getTaxa() get taxon list
boolean	hasSplit(boolean[] split) + test whether a split is contained in this split system (assuming the same leaf order)
String	toString() print split system

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

SplitSystem

public SplitSystem(Collection<Taxon> taxa,
                   int size)

Parameters:

taxa - the list of taxa

size - number of splits

Method Detail

getSplitCount

public int getSplitCount()

get number of splits

getLabelCount

public int getLabelCount()

get number of labels

getSplitVector

public boolean[][] getSplitVector()

get split vector

getSplit

public boolean[] getSplit(int i)

get split

getTaxa

public List<Taxon> getTaxa()

get taxon list

hasSplit

public boolean hasSplit(boolean[] split)

+ test whether a split is contained in this split system (assuming the same leaf order)

Parameters:

split - split

toString

public String toString()

print split system

Overrides:

toString in class Object