jebl.evolution.io
Class PHYLIPExporter

java.lang.Object
  jebl.evolution.io.PHYLIPExporter

All Implemented Interfaces:

AlignmentExporter

public class PHYLIPExporter
extends Object
implements AlignmentExporter

Export alignment to Phylip format. Must be one of the most braindead format around. Try to output something that hopefuly any "Phylip suppor" variant can read - up to 9 name chars, followed by a blank, followed by sequence on one line.

Author:

Joseph Heled

Constructor Summary

PHYLIPExporter(Writer writer)

Method Summary

void	exportAlignment(Alignment alignment) exportAlignment.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PHYLIPExporter

public PHYLIPExporter(Writer writer)

Parameters:

writer - where export text goes

Method Detail

exportAlignment

public void exportAlignment(Alignment alignment)
                     throws IOException

Description copied from interface: AlignmentExporter

exportAlignment.

Specified by:

exportAlignment in interface AlignmentExporter

Throws:

IOException