Uses of Package
jebl.evolution.trees

Packages that use jebl.evolution.trees

jebl.evolution.align	Provides classes and interfaces for pairwise alignment of two sequences.
jebl.evolution.characterReconstruction
jebl.evolution.coalescent
jebl.evolution.io
jebl.evolution.parsimony
jebl.evolution.trees
jebl.gui.trees.treecomponent
jebl.gui.trees.treeviewer
jebl.gui.trees.treeviewer.decorators
jebl.gui.trees.treeviewer.painters
jebl.gui.trees.treeviewer.treelayouts
jebl.gui.trees.treeviewer_dev.painters

Classes in jebl.evolution.trees used by jebl.evolution.align

RootedTree
A tree with a root (node with maximum height).

Tree
An unrooted tree.

TreeBuilderFactory.DistanceModel
Supported pairwise distance methods

TreeBuilderFactory.Method
Supported methods for tree building

Classes in jebl.evolution.trees used by jebl.evolution.characterReconstruction

SimpleRootedTree
A simple, and initially immutable rooted tree implementation.

Classes in jebl.evolution.trees used by jebl.evolution.coalescent

IntervalGenerator

RootedTree
A tree with a root (node with maximum height).

Classes in jebl.evolution.trees used by jebl.evolution.io

Tree
An unrooted tree.

Classes in jebl.evolution.trees used by jebl.evolution.parsimony

Tree
An unrooted tree.

Classes in jebl.evolution.trees used by jebl.evolution.trees

ClusteringTreeBuilder
An abstract base class for clustering algorithms from pairwise distances

ConsensusTreeBuilder
Build a consensus tree for a set of trees.

ConsensusTreeBuilder.Method
Supported consesus methods.

FilteredRootedTree

IntervalGenerator

RootedTree
A tree with a root (node with maximum height).

SortedRootedTree.BranchOrdering

SplitSystem
data structure for a set of splits

TransformedRootedTree.Transform

Tree
An unrooted tree.

TreeBuilder

TreeBuilderFactory.ConsensusMethod
Supported consensus methods.

TreeBuilderFactory.DistanceModel
Supported pairwise distance methods

TreeBuilderFactory.Method
Supported methods for tree building

Classes in jebl.evolution.trees used by jebl.gui.trees.treecomponent

RootedTree
A tree with a root (node with maximum height).

Classes in jebl.evolution.trees used by jebl.gui.trees.treeviewer

RootedTree
A tree with a root (node with maximum height).

SortedRootedTree.BranchOrdering

TransformedRootedTree.Transform

Tree
An unrooted tree.

Classes in jebl.evolution.trees used by jebl.gui.trees.treeviewer.decorators

Tree
An unrooted tree.

Classes in jebl.evolution.trees used by jebl.gui.trees.treeviewer.painters

RootedTree
A tree with a root (node with maximum height).

Classes in jebl.evolution.trees used by jebl.gui.trees.treeviewer.treelayouts

RootedTree
A tree with a root (node with maximum height).

Tree
An unrooted tree.

Classes in jebl.evolution.trees used by jebl.gui.trees.treeviewer_dev.painters

Tree
An unrooted tree.